conv_ids_cp: Converting gene IDS using orgDB

In Troshchk/bioEAT: bioExploreAnnotateTranslate

Description

This function returns a dataframe with the translated IDs.

Usage

conv_ids_cp(input, from, to, db)

Arguments

input	vector of the IDs to convert
from	input ID type
to	output ID type or vector of output ID types
db	annotation database

Details

This function takes a vector of IDs and translated them from the input format to the output format using the selected orgDB. In case the orgDB is not installed before launching the function, the function will exit with error.

Value

dataframe with the translated IDs

Examples

conv_ids_cp(rownames(df), "ENSEMBL", c("ENTREZID", "GENENAME"), "org.Mmu.eg.db")
conv_ids_cp(c("IFNA1", "IFNA13", "SLC2A3"), "SYMBOL", "ENSEMBL", "org.Mmu.eg.db")

Troshchk/bioEAT documentation built on Dec. 18, 2021, 5:13 p.m.