runDE: runDE

In UMMS-Biocore/debrowser: Interactive Differential Expresion Analysis Browser

runDE

Description

Run DE algorithms on the selected parameters. Output is to be used for the interactive display.

Usage

runDE(
  data = NULL,
  metadata = NULL,
  columns = NULL,
  conds = NULL,
  params = NULL
)

Arguments

data,	A matrix that includes all the expression raw counts, rownames has to be the gene, isoform or region names/IDs
metadata,	metadata of the matrix of expression raw counts
columns,	is a vector that includes the columns that are going to be analyzed. These columns has to match with the given data.
conds,	experimental conditions. The order has to match with the column order
params,	all params for the DE methods

Value

de results

Examples

    x <- runDE()

UMMS-Biocore/debrowser documentation built on Feb. 9, 2024, 6:15 p.m.