UMMS-Biocore/debrowser
Interactive Differential Expresion Analysis Browser

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375
Source code
49
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UMMS-Biocore/debrowser: Interactive Differential Expresion Analysis Browser
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API

API for UMMS-Biocore/debrowser
Interactive Differential Expresion Analysis Browser

Global functions
.initial Source code
.onAttach Source code
BoxMainPlotControlsUI Man page Source code
IQRPlotControlsUI Man page Source code
actionButtonDE Man page Source code
addDataCols Man page Source code
addID Man page Source code
all2all Man page Source code
all2allControlsUI Man page Source code
applyFilters Man page Source code
applyFiltersNew Man page Source code
applyFiltersToMergedComparison Man page
barMainPlotControlsUI Man page Source code
batchEffectUI Man page
batchMethod Man page Source code
changeClusterOrder Man page Source code
checkCountData Man page Source code
checkMetaData Man page Source code
clustFunParamsUI Man page Source code
clusterData Man page Source code
compareClust Man page Source code
condSelectUI Man page
correctCombat Man page
correctHarman Man page
customColorsUI Man page Source code
cutOffSelectionUI Man page Source code
dataLCFUI Man page
dataLoadUI Man page
deServer Man page Source code
deUI Man page Source code
debrowserIQRplot Man page Source code
debrowserall2all Man page Source code
debrowserbarmainplot Man page Source code
debrowserbatcheffect Man page Source code
debrowserboxmainplot Man page Source code
debrowsercondselect Man page Source code
debrowserdataload Man page Source code
debrowserdeanalysis Man page Source code
debrowserdensityplot Man page Source code
debrowserheatmap Man page Source code
debrowserhistogram Man page Source code
debrowserlowcountfilter Man page Source code
debrowsermainplot Man page Source code
debrowserpcaplot Man page Source code
dendControlsUI Man page Source code
densityPlotControlsUI Man page Source code
distFunParamsUI Man page Source code
drawKEGG Man page Source code
drawPCAExplained Man page Source code
fileTypes Man page Source code
fileUploadBox Man page Source code
generateTestData Man page Source code
getAfterLoadMsg Man page Source code
getAll2AllPlotUI Man page Source code
getBSTableUI Man page Source code
getBarMainPlot Man page Source code
getBarMainPlotUI Man page Source code
getBoxMainPlot Man page Source code
getBoxMainPlotUI Man page Source code
getColorShapeSelection Man page Source code
getColors Man page Source code
getCompSelection Man page Source code
getCondMsg Man page Source code
getConditionSelector Man page Source code
getConditionSelectorFromMeta Man page Source code
getCovariateDetails Man page Source code
getCutOffSelection Man page Source code
getDEAnalysisText Man page Source code
getDEResultsUI Man page
getDataAssesmentText Man page Source code
getDataForTables Man page Source code
getDataPreparationText Man page Source code
getDensityPlot Man page Source code
getDensityPlotUI Man page Source code
getDomains Man page Source code
getDown Man page Source code
getDownloadSection Man page Source code
getEnrichDO Man page Source code
getEnrichGO Man page Source code
getEnrichKEGG Man page Source code
getEntrezIds Man page Source code
getEntrezTable Man page Source code
getGOLeftMenu Man page Source code
getGOPlots Man page Source code
getGSEA Man page Source code
getGeneList Man page Source code
getGeneSetData Man page Source code
getGoPanel Man page Source code
getGroupSelector Man page Source code
getHeatmapUI Man page Source code
getHelpButton Man page Source code
getHideLegendOnOff Man page Source code
getHistogramUI Man page Source code
getIQRPlot Man page Source code
getIQRPlotUI Man page Source code
getIntroText Man page Source code
getJSLine Man page Source code
getKEGGModal Man page Source code Source code
getLeftMenu Man page Source code
getLegendColors Man page Source code
getLegendRadio Man page Source code
getLegendSelect Man page Source code
getLevelOrder Man page Source code
getLoadingMsg Man page Source code
getLogo Man page Source code
getMainPanel Man page Source code
getMainPlotUI Man page Source code
getMainPlotsLeftMenu Man page Source code
getMean Man page Source code
getMergedComparison Man page Source code
getMetaSelector Man page Source code
getMethodDetails Man page Source code
getMostVariedList Man page Source code
getNormalizedMatrix Man page Source code
getOrganism Man page Source code
getOrganismBox Man page Source code
getOrganismPathway Man page Source code
getPCAPlotUI Man page Source code
getPCAcontolUpdatesJS Man page Source code
getPCAexplained Man page Source code
getPCselection Man page Source code
getPlotArea Man page Source code
getProgramTitle Man page Source code
getQAText Man page Source code
getQCLeftMenu Man page Source code
getQCPanel Man page Source code
getSampleDetails Man page
getSampleNames Man page Source code
getSearchData Man page Source code
getSelHeat Man page Source code
getSelectInputBox Man page Source code
getSelectedCols Man page Source code
getSelectedDatasetInput Man page Source code
getShapeColor Man page Source code
getStartPlotsMsg Man page Source code
getStartupMsg Man page Source code
getTabUpdateJS Man page Source code
getTableDetails Man page Source code
getTableModal Man page Source code
getTableStyle Man page Source code
getUp Man page Source code
getUpDown Man page Source code
getVariationData Man page Source code
get_conditions_given_selection Man page Source code
heatmapControlsUI Man page Source code
heatmapJScode Man page Source code
heatmapServer Man page Source code
heatmapUI Man page Source code
hideObj Man page Source code
histogramControlsUI Man page Source code
installpack Man page Source code
kmeansControlsUI Man page Source code
lcfMetRadio Man page Source code
loadpack Man page
mainPlotControlsUI Man page Source code
mainScatterNew Man page Source code
niceKmeans Man page
normalizationMethods Man page Source code
palUI Man page Source code
panel.cor Man page Source code
panel.hist Man page Source code
pcaPlotControlsUI Man page Source code
plotData Man page Source code
plotMarginsUI Man page Source code
plotSizeMarginsUI Man page Source code
plotSizeUI Man page Source code
plotTypeUI Man page Source code
plot_pca Man page Source code
prepDataContainer Man page Source code
prepGroup Man page Source code
prepHeatData Man page Source code
prepPCADat Man page Source code
push Man page Source code
r Source code
removeCols Man page Source code
removeExtraCols Man page Source code
round_vals Man page Source code
runDE Man page Source code
runDESeq2 Man page Source code
runEdgeR Man page Source code
runHeatmap Man page Source code
runHeatmap2 Man page Source code
runLimma Man page Source code
run_pca Man page Source code
selectConditions Man page Source code
selectGroupInfo Man page Source code
selectedInput Man page Source code
sepRadio Man page Source code
setBatch Man page Source code
showObj Man page Source code
startDEBrowser Man page Source code
startHeatmap Man page Source code
textareaInput Man page Source code
togglePanels Man page Source code
UMMS-Biocore/debrowser documentation built on Feb. 9, 2024, 6:15 p.m.

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