Files in UMMS-Biocore/debrowser
debrowser: Interactive Differential Expresion Analysis Browser

.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/.gitignore
R/GOterm.R R/MAPlot.R R/QCSection.R R/all2all.R R/bookmark.R R/condSelect.R R/deprogs.R R/deseq2.R R/downloadSection.R R/funcs.R R/gopanel.R R/heatmap.R R/installpack.R R/link_brush.R R/load_data.R R/mainScatter.R R/mainpanel.R R/normalization.R R/pca.R R/plot_props.R R/prepdata.R R/sampleNames.R R/server.R R/startShiny.R R/ui.R R/uifuncs.R R/volcano.R README.md
debrowser.Rproj
docs/Makefile
docs/_build/doctrees/deseq/DEBrowser.doctree
docs/_build/doctrees/deseq/deseq.doctree
docs/_build/doctrees/environment.pickle
docs/_build/doctrees/future/FutureAdditions.doctree
docs/_build/doctrees/future/future.doctree
docs/_build/doctrees/index.doctree
docs/_build/doctrees/local/LocalInstall.doctree
docs/_build/doctrees/local/local.doctree
docs/_build/doctrees/quickstart/QuickstartGuide.doctree
docs/_build/doctrees/quickstart/quickstart.doctree
docs/_build/html/.buildinfo
docs/_build/html/_images/bargraph.png
docs/_build/html/_images/barplot.png
docs/_build/html/_images/comparison_table.png
docs/_build/html/_images/comparisons.png
docs/_build/html/_images/datatable.png
docs/_build/html/_images/de_analysis.png
docs/_build/html/_images/density_plot.png
docs/_build/html/_images/file_load.png
docs/_build/html/_images/filters.png
docs/_build/html/_images/go_dot_plot.png
docs/_build/html/_images/go_plots_opts.png
docs/_build/html/_images/go_summary.png
docs/_build/html/_images/info_tabs.png
docs/_build/html/_images/input_tab.png
docs/_build/html/_images/interactive_heatmap.png
docs/_build/html/_images/interactive_heatmap_zoom.png
docs/_build/html/_images/intro_qc_all2all.png
docs/_build/html/_images/intro_qc_heatmap.png
docs/_build/html/_images/intro_qc_pca.png
docs/_build/html/_images/intro_sidebar.png
docs/_build/html/_images/iqr_plot.png
docs/_build/html/_images/ma.png
docs/_build/html/_images/main_plots.png
docs/_build/html/_images/scatter_plot.png
docs/_build/html/_images/scatter_plot_selection.png
docs/_build/html/_images/scatter_plot_zoom.png
docs/_build/html/_images/selected_conditions.png
docs/_build/html/_images/volcano.png
docs/_build/html/_sources/deseq/DEBrowser.txt
docs/_build/html/_sources/deseq/deseq.txt
docs/_build/html/_sources/future/FutureAdditions.txt
docs/_build/html/_sources/future/future.txt
docs/_build/html/_sources/index.txt
docs/_build/html/_sources/local/LocalInstall.txt
docs/_build/html/_sources/local/local.txt
docs/_build/html/_sources/quickstart/QuickstartGuide.txt
docs/_build/html/_sources/quickstart/quickstart.txt
docs/_build/html/_static/ajax-loader.gif
docs/_build/html/_static/alabaster.css
docs/_build/html/_static/basic.css
docs/_build/html/_static/comment-bright.png
docs/_build/html/_static/comment-close.png
docs/_build/html/_static/comment.png
docs/_build/html/_static/custom.css
docs/_build/html/_static/doctools.js
docs/_build/html/_static/down-pressed.png
docs/_build/html/_static/down.png
docs/_build/html/_static/file.png
docs/_build/html/_static/jquery-1.11.1.js
docs/_build/html/_static/jquery.js
docs/_build/html/_static/minus.png
docs/_build/html/_static/plus.png
docs/_build/html/_static/pygments.css
docs/_build/html/_static/searchtools.js
docs/_build/html/_static/underscore-1.3.1.js
docs/_build/html/_static/underscore.js
docs/_build/html/_static/up-pressed.png
docs/_build/html/_static/up.png
docs/_build/html/_static/websupport.js
docs/_build/html/deseq/DEBrowser.html
docs/_build/html/deseq/deseq.html
docs/_build/html/future/FutureAdditions.html
docs/_build/html/future/future.html
docs/_build/html/genindex.html
docs/_build/html/index.html
docs/_build/html/local/LocalInstall.html
docs/_build/html/local/local.html
docs/_build/html/objects.inv
docs/_build/html/quickstart/QuickstartGuide.html
docs/_build/html/quickstart/quickstart.html
docs/_build/html/search.html
docs/_build/html/searchindex.js
docs/conf.py
docs/debrowser_pics/.DS_Store
docs/debrowser_pics/._all2all.png
docs/debrowser_pics/._bargraph.png
docs/debrowser_pics/._barplot.png
docs/debrowser_pics/._condition_selection.png
docs/debrowser_pics/._dataset_choose.png
docs/debrowser_pics/._datatable.png
docs/debrowser_pics/._file_load.png
docs/debrowser_pics/._filters.png
docs/debrowser_pics/._fit_type.png
docs/debrowser_pics/._heatmap.png
docs/debrowser_pics/._info_tabs.png
docs/debrowser_pics/._input_tab.png
docs/debrowser_pics/._pca.png
docs/debrowser_pics/._scatter_plot.png
docs/debrowser_pics/._scatter_plot_selection.png
docs/debrowser_pics/._scatter_plot_zoom.png
docs/debrowser_pics/add_plots_opts.png
docs/debrowser_pics/after_batch_correction.png
docs/debrowser_pics/all2all.png
docs/debrowser_pics/bargraph.png
docs/debrowser_pics/barplot.png
docs/debrowser_pics/batch_chart.png
docs/debrowser_pics/batch_corrected.png
docs/debrowser_pics/batch_normal.png
docs/debrowser_pics/before_batch_correction.png
docs/debrowser_pics/choose_ontology.png
docs/debrowser_pics/comparison_table.png
docs/debrowser_pics/comparisons.png
docs/debrowser_pics/condition_selection.png
docs/debrowser_pics/dataset_choose.png
docs/debrowser_pics/datatable.png
docs/debrowser_pics/de_analysis.png
docs/debrowser_pics/density_plot.png
docs/debrowser_pics/file_load.png
docs/debrowser_pics/filters.png
docs/debrowser_pics/fit_type.png
docs/debrowser_pics/go_dot_plot.png
docs/debrowser_pics/go_opts.png
docs/debrowser_pics/go_plot_opts.png
docs/debrowser_pics/go_plots_opts.png
docs/debrowser_pics/go_summary.png
docs/debrowser_pics/google_login.png
docs/debrowser_pics/google_permissions.png
docs/debrowser_pics/heatmap.png
docs/debrowser_pics/history.png
docs/debrowser_pics/info_tabs.png
docs/debrowser_pics/input_tab.png
docs/debrowser_pics/interactive_heatmap.png
docs/debrowser_pics/interactive_heatmap_zoom.png
docs/debrowser_pics/intro_genelist.png
docs/debrowser_pics/intro_qc_all2all.png
docs/debrowser_pics/intro_qc_heatmap.png
docs/debrowser_pics/intro_qc_pca.png
docs/debrowser_pics/intro_sidebar.png
docs/debrowser_pics/intro_varied.png
docs/debrowser_pics/iqr_plot.png
docs/debrowser_pics/ma.png
docs/debrowser_pics/main_plots.png
docs/debrowser_pics/name_the_save.png
docs/debrowser_pics/new_screenshots/.DS_Store
docs/debrowser_pics/new_screenshots/add_plots_opts.png
docs/debrowser_pics/new_screenshots/choose_ontology.png
docs/debrowser_pics/new_screenshots/dataset_choose.png
docs/debrowser_pics/new_screenshots/datatable.png
docs/debrowser_pics/new_screenshots/de_analysis.png
docs/debrowser_pics/new_screenshots/file_load.png
docs/debrowser_pics/new_screenshots/filters.png
docs/debrowser_pics/new_screenshots/go_plots_opts.png
docs/debrowser_pics/new_screenshots/go_summary.png
docs/debrowser_pics/new_screenshots/google_login.png
docs/debrowser_pics/new_screenshots/google_permissions.png
docs/debrowser_pics/new_screenshots/history.png
docs/debrowser_pics/new_screenshots/info_tabs.png
docs/debrowser_pics/new_screenshots/input_tab.png
docs/debrowser_pics/new_screenshots/intro_genelist.png
docs/debrowser_pics/new_screenshots/main_plots.png
docs/debrowser_pics/new_screenshots/name_the_save.png
docs/debrowser_pics/new_screenshots/save_selection.png
docs/debrowser_pics/new_screenshots/save_successful.png
docs/debrowser_pics/new_screenshots/sign_out_or_refresh.png
docs/debrowser_pics/old_screenshots/.DS_Store
docs/debrowser_pics/old_screenshots/add_plots_opts.png
docs/debrowser_pics/old_screenshots/choose_ontology.png
docs/debrowser_pics/old_screenshots/datatable.png
docs/debrowser_pics/old_screenshots/filters.png
docs/debrowser_pics/old_screenshots/go_plots_opts.png
docs/debrowser_pics/old_screenshots/info_tabs.png
docs/debrowser_pics/old_screenshots/input_tab.png
docs/debrowser_pics/old_screenshots/intro_genelist.png
docs/debrowser_pics/save_selection.png
docs/debrowser_pics/save_successful.png
docs/debrowser_pics/scatter_plot.png
docs/debrowser_pics/scatter_plot_hover.png
docs/debrowser_pics/scatter_plot_selection.png
docs/debrowser_pics/scatter_plot_zoom.png
docs/debrowser_pics/selected_conditions.png
docs/debrowser_pics/sign_out_or_refresh.png
docs/debrowser_pics/volcano.png
docs/deseq/deseq.rst
docs/future/future.rst
docs/index.rst
docs/local/local.rst
docs/quickstart/quickstart.rst
inst/extdata/demo/demodata.Rda
inst/extdata/www/favicon.ico
inst/extdata/www/images/delete_button.png
inst/extdata/www/images/initial_loading.gif
inst/extdata/www/images/loading.gif
inst/extdata/www/images/loading2.gif
inst/extdata/www/images/loading_start.gif
inst/extdata/www/images/logo.png
inst/extdata/www/shinydashboard_additional.css
man/MAPlot.Rd man/MAZoom.Rd man/actionButton.Rd man/addDataCols.Rd man/addID.Rd man/add_title_pos.Rd man/all2all.Rd man/applyFilters.Rd man/applyFiltersToMergedComparison.Rd man/bookmarkServer.Rd man/bookmarkUI.Rd man/clusterData.Rd man/compareClust.Rd man/copy2newDirectory.Rd man/correctBatchEffect.Rd man/deServer.Rd man/deUI.Rd man/drawPCAExplained.Rd man/getAfterLoadMsg.Rd man/getColorShapeSelection.Rd man/getColors.Rd man/getCompSelection.Rd man/getCondMsg.Rd man/getConditionSelector.Rd man/getConditionSelectorFromMeta.Rd man/getCutOffSelection.Rd man/getDataForTables.Rd man/getDataPrepPanel.Rd man/getDensityPlot.Rd man/getDomains.Rd man/getDown.Rd man/getDownloadSection.Rd man/getEnrichDO.Rd man/getEnrichGO.Rd man/getEnrichKEGG.Rd man/getEntrezIds.Rd man/getGOLeftMenu.Rd man/getGOPlots.Rd man/getGeneList.Rd man/getGeneSetData.Rd man/getGoPanel.Rd man/getHelpButton.Rd man/getHoverPlots.Rd man/getIQRPlot.Rd man/getInitialMenu.Rd man/getIntHeatmap.Rd man/getIntHeatmapVis.Rd man/getJsonObj.Rd man/getKEGGModal.Rd man/getLeftMenu.Rd man/getLegendSelect.Rd man/getLoadingMsg.Rd man/getLogo.Rd man/getMainPanel.Rd man/getMainPanelPlots.Rd man/getMainPlotsLeftMenu.Rd man/getMean.Rd man/getMergedComparison.Rd man/getMethodDetails.Rd man/getMostVariedList.Rd man/getNormalizedMatrix.Rd man/getOrganism.Rd man/getOrganismBox.Rd man/getOrganismPathway.Rd man/getPCAexplained.Rd man/getPCselection.Rd man/getProgramTitle.Rd man/getQCLeftMenu.Rd man/getQCPanel.Rd man/getQCPlots.Rd man/getQCReplot.Rd man/getSampleNames.Rd man/getSamples.Rd man/getSearchData.Rd man/getSelHeat.Rd man/getSelectInputBox.Rd man/getSelectedCols.Rd man/getSelectedDatasetInput.Rd man/getShapeColor.Rd man/getStartPlotsMsg.Rd man/getStartupMsg.Rd man/getTableStyle.Rd man/getTextOnOff.Rd man/getToolTipPCA.Rd man/getToolTipText.Rd man/getUp.Rd man/getUpDown.Rd man/get_state_id.Rd man/get_user_info.Rd man/hideObj.Rd man/installpack.Rd man/link_brush.Rd man/load_data.Rd man/loadpack.Rd man/logSliderJScode.Rd man/mainScatter.Rd man/panel.cor.Rd man/panel.hist.Rd man/plot_pca.Rd man/prepAddQCPlots.Rd man/prepDEOutput.Rd man/prepDataContainer.Rd man/prepDataForQC.Rd man/push.Rd man/readMetaData.Rd man/removeBookmark.Rd man/removeCols.Rd man/round_vals.Rd man/runBayseq.Rd man/runDE.Rd man/runDESeq.Rd man/runDESeq2.Rd man/runEdgeR.Rd man/runHeatmap.Rd man/runLimma.Rd man/run_pca.Rd man/saveQCPlot.Rd man/scatterZoom.Rd man/selectBatchEffect.Rd man/selectConditions.Rd man/selectedInput.Rd man/setFilterParams.Rd man/showObj.Rd man/startDEBrowser.Rd man/textareaInput.Rd man/togglePanels.Rd man/volcanoPlot.Rd man/volcanoZoom.Rd man/whitelist.Rd tests/test-demo.R tests/test-deseq.R tests/test-null.R tests/test-ui.R vignettes/DEBrowser.Rmd
UMMS-Biocore/debrowser documentation built on Oct. 30, 2017, 6:33 p.m.