Man pages for UMMS-Biocore/dprofiler
Dprofiler:
| addDataCols | addDataCols |
| applyFiltersIter | applyFiltersIter |
| batchEffectUI | batchEffectUI Creates a panel to coorect batch effect |
| condSelectUI | condSelectUI |
| connectMongo | connectMongo |
| custom_silhouette | custom_silhouette |
| cutOffSelectionUI | cutOffSelectionUI |
| dataLCFUI | dataLCFUI Creates a panel to filter low count genes and... |
| dataLoadServer | dataLoadServer |
| dataProfileUI | dataProfileUI |
| dataSCUI | dataSCUI |
| dataUI | dataLoadUI |
| DBUI | DBUI |
| deconvolute | deconvolute |
| display_venn | display_venn |
| dprofiler | 'dprofiler' package |
| dprofilerbarmainplot | dprofilerbarmainplot |
| dprofilerBatch | dprofilerBatch |
| dprofilerboxmainplot | dprofilerboxmainplot |
| dprofilercondselect | dprofilercondselect |
| dprofilerdeanalysis | dprofilerdeanalysis |
| dprofilerdeconvolute | dprofilerdeconvolute |
| dprofilerdeconvolute_old | dprofilerdeconvolute |
| dprofilerFilter | dprofilerFilter |
| dprofilerheatmap | dprofilerheatmap |
| dprofilermainplot | dprofilermainplot |
| dprofilerprofiling | dprofilerprofiling |
| dprofilerServer | dprofilerServer |
| dprofilersummariser | summaryServer |
| dprofilerUI | dprofilerUI |
| external_silhouette | external_silhouette |
| fileSummaryBox | fileSummaryBox |
| fileUploadBox | fileUploadBox |
| getAllMarkerGenes | getAllMarkerGenes |
| getAllProfGenes | getAllProfGenes |
| getAllScoreDetails | getAllScoreDetails |
| getCCAEmbedding | getCCAEmbedding |
| getComparativeProfText | getComparativeProfText |
| getCompCellularText | getCompCellularText |
| getCompProfilingText | getCompProfilingText |
| getConditionSelectorFromMeta | getConditionSelectorFromMeta |
| getDataAssesmentText | getDataAssesmentText |
| getDataMongo | getDataMongo |
| getDeconvoluteTableDetails | getDeconvoluteTableDetails |
| getDeconvoluteUI | getDeconvoluteUI |
| getDEgenesDownloadButtons | getDEgenesDownloadButtons |
| getDEResultsUI | getDEResultsUI |
| getDprofilerText | getDprofilerText |
| getExpressionProfiles | getExpressionProfiles |
| getFinalScores | getFinalScores |
| getHeatmapMarkerGenes | getHeatmapMarkerGenes |
| getIconLabel | getIconLabel |
| getIdentSelectorFromMeta | getIdentSelectorFromMeta |
| getIntroText | getIntroText |
| getIterDESummary | getIterDESummary |
| getIterMethodDetails | getIterMethodDetails |
| getJSLine | getJSLine |
| getLegendColors | getLegendColors |
| getMainPlot | getMainPlot |
| getMetaSelector | getMetaSelector |
| getMethodDetails | get the detail boxes after DE method selected |
| getMethodDetails_old | get the detail boxes after DE method selected |
| getOutlierScores | getOutlierScores |
| getOutlierScores.old | getOutlierScores.old |
| getPCAEmbedding | getPCAEmbedding |
| getPlotArea | getPlotArea |
| getProfileSampleDetails | getProfileSampleDetails |
| getProfileScoreDetails | getProfileScoreDetails |
| getProfileScores | getProfileScores |
| getProfileSelector | getProfileSelector |
| getProfilingMethodDetails | getProfilingMethodDetails |
| getProfilingParameter | getProfilingParameter |
| getProfilingUI | getProfilingUI |
| getQAText | getQAText |
| getReferenceProfileRNA | getReferenceProfileRNA |
| getReferenceSingleCellRNA | getReferenceSingleCellRNA |
| getScoreDetails | getScoreDetails |
| getSCRNAEmbedding | getSCRNAEmbedding |
| getScRNAMetaSelector | getScRNAMetaSelector |
| getSCRNASampleDetails | getSCRNASampleDetails |
| getTabUpdateJS | getTabUpdateJS |
| heatmapJScode | heatmapJScode |
| heatmapServer | heatmapServer |
| heatmapUI | heatmapUI |
| hideMulti | hideMulti |
| insertDataMongo | insertDataMongo |
| MainLoadPage | MainLoadPage |
| mainPlotControlsUI | mainPlotControlsUI |
| mainScatter | mainScatter |
| MergeScoreTables | MergeScoreTables |
| mongoServer | mongoServer |
| mongoServerUI | mongoServerUI |
| outlier_silhouette | outlier_silhouette |
| prepDataContainer_old | prepDataContainer |
| prepDeconvolute_old | prepDeconvolute |
| prepDEparameters | prepDEparameters |
| profilefileUploadBox | profilefileUploadBox |
| runDE | runDE |
| runIterDE | runIterDE |
| runLimma | runLimma |
| runMultipleDE | runMultipleDE |
| scfileUploadBox | scfileUploadBox |
| ScoreCutOffSelectionUI | ScoreCutOffSelectionUI |
| selectConditions | selectConditions |
| selectDataMongo | selectDataMongo |
| selectProfilingConditions | selectProfilingConditions |
| selectScRNAConditions | selectScRNAConditions |
| sepRadio | sepRadio |
| showMulti | showMulti |
| simulateProfilingData | simulateProfilingData |
| startDprofiler | startDprofiler |
| SummaryUI | SummaryUI |
| UpdateMongoSearchBox | UpdateMongoSearchBox |
| validatebulkReference | validatebulkReference |
| validatescReference | validatescReference |
