R/pfamscanr-package.R

In USCbiostats/pfamscanr: An R client for EMBL-EBI's PfamScan API

#' Insulin-like growth factor-binding protein complex acid labile subunit
#'
#' A dataset containing the result from querying:
#' \preformatted{>sp|P35858|ALS_HUMAN ... OS=Homo sapiens GN=IGFALS PE=1 SV=1
#' MALRKGGLALALLLLSWVALGPRSLEGADPGTPGEAEGPACPAACVCSYDD
#' DADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGF
#' LNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLALGTFAHTPALASLGL
#' SNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGN
#' RLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIA
#' AVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLR
#' PRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGA
#' FLGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTG
#' LSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTHLPHRLFQGLGK
#' LEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRY
#' LSLRNNSLRTFTPQPPGLERLWLEGNPWDCGCPLKALRDFALQNPSAVPRF
#' VQAICEGDDCQPPAYTYNNITCASPPEVVGLDLRDLSEAHFAPC}
#'
#' @format
#' \describe{
#'   \item{`model_length`}{Character}
#'   \item{`align`}{List}
#'   \item{`env`}{data.frame with 2 variables}
#'   \item{`name`}{Character}
#'   \item{`acc`}{Character}
#'   \item{`sig`}{Integer}
#'   \item{`evalue`}{Character}
#'   \item{`desc`}{Character}
#'   \item{`hmm`}{data.frame with two columns}
#'   \item{`act_site`}{logical}
#'   \item{`type`}{character}
#'   \item{`bits`}{character}
#'   \item{`clan`}{character}
#'   \item{`seq`}{data.frame with three variables}
#' }
#'
#' @source \url{https://www.uniprot.org/uniprot/P35858}
"P35858"