AnnotatePeaklist | Annotates Peak.list with In House Library |
calc_corrstat | Calculate correlation matrices for metabolite groups |
calc_cv | Calculate coeffient of variation (CV) by pooled QCs |
calc_minfrac | Calculate minimum fraction of features across sample classes |
CAMERAFiles_dlg | CAMERA Files Dialog Box |
CombineFeatures | Combines Features into Metabolites |
combine_ion_modes | Combines Peak.lists from Two Ionization Modes |
CombinePeaklists | Combine Peaklists from different ion modes |
combine_phenodata | Combine phenotype data in Peak.list |
connect_libdb | Connects to library database |
connect_lumadb | Connects to LUMA database |
connect_peakdb | Connects to peak database |
CullBackground | Culls the Peak.list by Background |
CullCV | Culls the Peak.list by Percent CV |
CullMF | Culls the Peak.list by Minimum Fraction |
CullVoidVolume | Culls the Peak.list by Void volume |
FinalWorkflow | Constructor module to finalize LUMA workflow |
find_Background | Finds background components in Peak.list |
FormatForMetaboAnalystR | Formatting of metabolite data for MetaboAnalystR. |
FormatForSIMCA | Format Peaklists for input into SIMCA |
format_MetabolomicData | Formatting of metabolomic data for MetaboAnalystR. |
format_simca | Formats Peak.list for SIMCA |
gen_filebase | Generate Filebase |
get_features | Retrieves features from Peak.list in a database |
InitWorkflow | Constructor module to initiate LUMA Workflow |
InputFiles_dlg | Input Files Dialog Box |
LUMA-package | LCMS Untargeted Metabolomics Assistant |
match_Annotation | Matches Peak.list annotations against Annotated Library |
mSetObj | Example mSetObj |
NormalizePeaklists | Normalize Peaklists from different ion modes |
normalize_unit | normalize_unit |
output_MetaData | Printing metadata as CSV files for MetaboAnalystR. |
ParseCAMERA | Parses CAMERA annotations |
parse_neg_results | CAMERA Parser in negative mode |
parse_pos_results | CAMERA Parser in positive mode |
Peaklist_Pos | Peaklist_Pos_db Tables |
plot_ionduplicate | Loop-based EIC Plotter for Ion Mode Duplicates |
plot_metgroup | Loop-based EIC Plotter for metabolite groups |
pre_combine_ion_modes | Combines Peak.lists Simply |
read_tbl | Reads Peak.list from database |
remove_background_peaks | Removes background components from Peak.list |
remove_ion_dup | Removes Ion Mode Duplicates |
remove_void_volume | Removes void volume from Peak.list |
replace_zeros_normalize | Replaces zeros and normalizes |
ScriptInfo_dlg | Script Info Dialog Box |
search_IonDup | Searches Peak.list for ion mode duplicates |
SimplyPeaklists | Combine Peaklists simply |
sum_features | Sum features by metabolite group |
trim_cv | Trims by CV |
trim_minfrac | Trims by MinFrac |
trim_rt | Trims by retention time |
wrap_camera | Wraps CAMERA |
wrap_xcms | Wraps xcms |
write_tbl | Writes Peak.list to database |
write_xlsx | Writes xlsx table |
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