gen_filebase: Generate Filebase
In USEPA/LUMA: LCMS-Based Untargeted Metabolomics Assistant

Description Usage Arguments Value Examples

Generates filebase for reading and writing to databases

1	gen_filebase(mzdatafiles, BLANK, ion.id, IonMode)

`mzdatafiles`	character vector containing data files to process and store results in databases
`BLANK`	a logical indicating whether blanks are being evaluated
`ion.id`	character vector of length 2 specifying identifier in filename designating positive or negative ionization mode. Positive identifier must come first.
`IonMode`	a character string defining the ionization mode. Must be either 'Positive' or 'Negative'

character

library(LUMA)
# is case sensitive on Linux
file <- system.file("extdata","Sample_Data.csv", package =  "LUMA")
sample_data <- read.table(file, header = TRUE, sep = ",")
mzdatafiles <- sample_data$CT.ID
test <- gen_filebase(mzdatafiles = mzdatafiles, BLANK = FALSE, IonMode =
"Positive", ion.id = c("Pos","Neg")) #Returns "Peaklist_Pos"
print(test)