Man pages for USEPA/LakeTrophicModelling
Package to reproduce Hollister et al. (2015) Modeling Lake Trophic State: A Randrom Forest Approach.
| class_prob_rf | Get Class Prediction Probabilities |
| condAccuracy | Plot conditional accuracy |
| crossval_rf | Cross Validate Random Forests to get Categorical Accuracy |
| density_plot | density plot for lake trophic modeling paper |
| ecdf_ks_ci | Kolmogrov-Smirnoff CIs for a ecdf |
| ecor_map | Create map of Ecoregions |
| getCyanoAbund | Pulls down cyano abundance from NLA website |
| getLakeIDs | getLakeIDs |
| importancePlot | Random Forest Variable Importance Plotting |
| iterVarSelRF | iterVarSelRF |
| ltm | ltm. |
| make_ts_map | helper function to generate each map |
| multiplot | Create Mulitple Plots with ggplots (from Winston Chang) |
| nlaMap | Create map of NLA samples |
| partial_plot | Create parital dependence plot |
| plotCdf | plotCDF Function to create CDFs of chla, ts, and cyano |
| pred_prob_map | Create map of discrete predicted probabilities |
| prob_cdf | Function to create CDFs of probability for each trophic state... |
| runRandomForest | runRandomForest |
| scatterPlot | Scatterplot for hkm2014esa poster |
| sumTable | sumTable |
| table_to_df | convert table to df |
| ts_prob_map | Create map of trophic state probabilities |
| varImportance | Variable Importance Summary |
| varsel_plot | Plot varsel_regression output |
| varsel_regression_rf | Variable Selection with Regression RF |
