xpose.plot.qq: The generic Xpose functions for QQ plots

In UUPharmacometrics/xpose4: Diagnostics for Nonlinear Mixed-Effect Models

The generic Xpose functions for QQ plots

Description

This is a wrapper function for the lattice qqmath function.

Usage

xpose.plot.qq(
  x,
  object,
  inclZeroWRES = FALSE,
  onlyfirst = FALSE,
  samp = NULL,
  aspect = object@[e-mail]$aspect,
  scales = list(),
  by = object@[e-mail]$condvar,
  force.by.factor = FALSE,
  ordby = object@[e-mail]$ordby,
  byordfun = object@[e-mail]$byordfun,
  shingnum = object@[e-mail]$shingnum,
  shingol = object@[e-mail]$shingol,
  strip = function(...) strip.default(..., strip.names = c(TRUE, TRUE)),
  subset = xsubset(object),
  main = xpose.create.title.hist(x, object, subset, ...),
  xlb = "Quantiles of Normal",
  ylb = paste("Quantiles of ", xlabel(x, object), sep = ""),
  pch = object@[e-mail]$pch,
  col = object@[e-mail]$col,
  cex = object@[e-mail]$cex,
  abllty = object@[e-mail]$abllty,
  abllwd = object@[e-mail]$abllwd,
  ablcol = object@[e-mail]$ablcol,
  mirror = FALSE,
  max.plots.per.page = 4,
  mirror.aspect = "fill",
  pass.plot.list = FALSE,
  x.cex = NULL,
  y.cex = NULL,
  main.cex = NULL,
  mirror.internal = list(strip.missing = missing(strip)),
  ...
)

Arguments

x	A string or a vector of strings with the name(s) of the x-variable(s).
object	An "xpose.data" object.
inclZeroWRES	A logical value indicating whether rows with WRES=0 should be plotted.
onlyfirst	A logical value indicating whether only the first row per individual should be included in the plot.
samp	An integer between 1 and object@Nsim (seexpose.data-class) specifying which of the simulated data sets to extract from SData.
aspect	The aspect ratio of the display (see qqmath).
scales	A list to be used for the scales argument in qqmath.
by	A string or a vector of strings with the name(s) of the conditioning variables.
force.by.factor	Logical value. If TRUE, and by is not NULL, the variable specified by by is taken as categorical.
ordby	A string with the name of a variable to be used to reorder any factor conditioning variables (by). The variable is used in a call to the reorder function.
byordfun	The name of the function to be used when reordering a factor conditioning variable (see argument ordby).
shingnum	The number of shingles ("parts") a continuous conditioning variable should be divided into.
shingol	The amount of overlap between adjacent shingles (see argument shingnum).
strip	The name of the function to be used as the strip argument to the xyplot.
subset	A string giving the subset expression to be applied to the data before plotting. See xsubset.
main	A string giving the plot title or NULL if none.
xlb	A string giving the label for the x-axis. NULL if none.
ylb	A string giving the label for the y-axis. NULL if none.
pch	Plotting symbol.
col	Color of plotting symbol.
cex	Amount to scale the plotting character by.
abllty	Line type for qqline.
abllwd	Line width for qqline.
ablcol	Color for qqline.
mirror	Should we create mirror plots from simulation data? Value can be FALSE, TRUE or 1 for one mirror plot, or 3 for three mirror plots.
max.plots.per.page	The maximum number of plots per page that can be created with the mirror plots.
mirror.aspect	The aspect ratio of the plots used for mirror functionality.
pass.plot.list	Should we pass the list of plots created with mirror or should we print them directly. Values can be TRUE/FALSE.
x.cex	The size of the x-axis label.
y.cex	The size of the y-axis label.
main.cex	The size of the title.
mirror.internal	an internal mirror argument used in create.mirror. Checks if the strip argument from qqmath has been used.
...	Other arguments passed to xpose.plot.qq.

Author(s)

E. Niclas Jonsson, Mats Karlsson, Andrew Hooker & Justin Wilkins

See Also

xpose.panel.qq, qqmath, panel.qqmathline, xpose.data-class

Examples

## Not run: 
## xpdb5 is an Xpose data object
## We expect to find the required NONMEM run and table files for run
## 5 in the current working directory
xpdb5 <- xpose.data(5)

## A QQ plot of WRES
xpose.plot.qq("WRES", xpdb5) 

## End(Not run)

UUPharmacometrics/xpose4 documentation built on Feb. 22, 2024, 5:02 p.m.