write_dbgap: Write dbGaP files
In UW-GAC/dbgaptools: Creates and Checks Standard Files for dbGaP submission

Description Usage Arguments Details Value

View source: R/write_functions.R

Wrapper to write.table function to output dbGaP dataset (DS) and data dictionary (DD) files.

1 2	write_dbgap(x, file = "", study_name = NULL, phs = NULL, DD = FALSE, dstype = "", generate_fn = FALSE)

`x`	Object to write out
`file`	Filename. Can leave unspecified if `generate_fn=TRUE`
`study_name`	Study name
`phs`	dbGaP PHS accession number
`DD`	logical flag, set to TRUE for DD file, FALSE for DS
`dstype`	Type of file, one of "pheno","ped","sattr","ssm","subj." Can be left as default/NULL if `generate_fn=FALSE`
`generate_fn`	logical flag on whether to have filename generated for you

If generate_fn=FALSE, the argument to file will be used as the file name. File paths will be followed; if none given, will write to current working directory. If generate_fn=TRUE, one of either study_name or phs must be provided. If generate_fn=TRUE, fill will always be written to current working directory.

Write file to disk.

UW-GAC/dbgaptools documentation built on Nov. 3, 2020, 12:19 a.m.