Files in UW-GAC/dbgaptools
Creates and Checks Standard Files for dbGaP submission
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/check_cross_file.R
R/check_functions.R
R/constants.R
R/dbgaptools.R
R/make_functions.R
R/read_functions.R
R/write_functions.R
README.md
inst/extdata/2a_dbGaP_SubjectPhenotypesDS.txt
inst/extdata/2b_dbGaP_SubjectPhenotypesDD.xlsx
inst/extdata/3a_dbGaP_SampleAttributesDS.txt
inst/extdata/3b_dbGaP_SampleAttributesDD.xlsx
inst/extdata/4a_dbGaP_SubjectDS.txt
inst/extdata/4b_dbGaP_SubjectDD.xlsx
inst/extdata/5a_dbGaP_SubjectSampleMappingDS.txt
inst/extdata/5b_dbGaP_SubjectSampleMappingDD.xlsx
inst/extdata/6a_dbGaP_PedigreeDS.txt
inst/extdata/6b_dbGaP_PedigreeDD.xlsx
inst/extdata/phs000001.v3.pht000378.v2.hospitalization.data_dict.xml
inst/extdata/phs000001.v3.pht002477.v1.AREDS_Subject.data_dict.xml
inst/extdata/sampleAttributesDD_hasheader.txt
inst/extdata/sampleAttributesDD_hasheader.xlsx
inst/extdata/sampleAttributesDD_noheader.csv
inst/extdata/sampleAttributesDD_noheader.txt
inst/extdata/sampleAttributesDD_noheader.xlsx
inst/extdata/sampleAttributesDD_noheader_multSheets.xlsx
man/check_cross_file.Rd
man/check_dd.Rd
man/check_ped.Rd
man/check_pheno.Rd
man/check_sattr.Rd
man/check_ssm.Rd
man/check_subj.Rd
man/count_hdr_lines.Rd
man/read_dd_file.Rd
man/read_ds_file.Rd
man/write_dbgap.Rd
tests/testthat.R
tests/testthat/test_check_cross_file.R
tests/testthat/test_check_dd.R
tests/testthat/test_check_ped.R
tests/testthat/test_check_pheno.R
tests/testthat/test_check_sattr.R
tests/testthat/test_check_ssm.R
tests/testthat/test_check_subj.R
tests/testthat/test_read_fcns.R
tests/testthat/test_write_dbgap.R
