output_figure_lines: Prints a lines of data as ggplot2 with potentially different...
In UniK-INES/dexR: Analysing and Reporting DEX Experiments

Description Usage Arguments Value Author(s) See Also

View source: R/dexr_output_figure_lines.R

Prints a lines of data as ggplot2 with potentially different colour, linetype, and potentially as facet plot. Uses ticks as X variable if present, runid otherwise.

output_figure_lines(
  dexpa = dexpa,
  data = data,
  x_column = NULL,
  y_column,
  title = NULL,
  colour_column = NULL,
  colour_legendtitle = colour_column,
  colour_legenditemnames = NULL,
  linetype_column = NULL,
  linetype_legendtitle = linetype_column,
  linetype_legenditemnames = NULL,
  facet_column = NULL,
  facet_ncol = 2,
  filename = paste(dexpa$fig$filenameprefix, gsub(" ", "_", title),
    shbasic::shbasic_condenseRunids(data[, "id"]), dexpa$fig$filenamepostfix, sep = "_"),
  alpha = dexpa$fig$alpha,
  showsd = FALSE,
  ggplotaddons = NULL,
  returnplot = FALSE
)

`dexpa`	parameter object
`data`	data.frame or list that is rbinded to a data.frame
`x_column`	column name for x data
`y_column`	column name for y data
`title`	figure title
`colour_column`	column used to define colours
`colour_legendtitle`	title for colour legend
`colour_legenditemnames`	vector of names for colour legend items
`linetype_column`	column used to define linetypes
`linetype_legendtitle`	title for linetype legend
`linetype_legenditemnames`	vector of names for linetype legend items
`facet_column`	column used to define facets
`facet_ncol`	number of columns of facet wrap
`filename`	without extension
`alpha`	transparency
`showsd`	if `TRUE` line shows mean and ribbons standard deviation (requires multiple data points per group)
`ggplotaddons`	vector of ggplot objects to add
`returnplot`	if true the ggplot object is returned