API for UofABioinformaticsHub/strandCheckR
Calculate strandness information of a bam file
| Global functions | |
|---|---|
| .calculateStrandCoverage | Man page Source code |
| .calculateStrandNbReads | Man page Source code |
| .concatenateAlignments | Man page Source code |
| .getWinInSequence | Man page Source code |
| .keptProbaWin | Man page Source code |
| .keptReadFragment | Man page Source code |
| .sequenceInfoInPartition | Man page Source code |
| .summarizeHist | Man page Source code |
| checkPairedEnd | Man page Source code |
| filterDNA | Man page Source code |
| getStrandFromBamFile | Man page Source code |
| getStrandFromReadInfo | Man page Source code |
| getWinOverlapEachIRange | Man page Source code |
| getWinOverlapEachReadFragment | Man page Source code |
| getWinOverlapGRanges | Man page Source code |
| intersectWithFeature | Man page Source code |
| plotHist | Man page Source code |
| plotWin | Man page Source code |
| strandCheckR | Man page |
| strandCheckR-package | Man page |
