dot-calculateStrandNbReads: Calculate the strand information based on the number of reads
In UofABioinformaticsHub/strandCheckR: Calculate strandness information of a bam file
Description
Usage
Arguments
Value
Description
Calculate the number of reads coming from '+'/'-' strands in
all sliding wndows
Usage
1
.calculateStrandNbReads(winPosAlignments, winNegAlignments)
Arguments
winPosAlignments
a list that has a 'Win' field that contains
information of sliding windows overalapping positive reads
winNegAlignments
a a list that has a 'Win' field that contains
information of sliding windows overalapping negative reads
Value
a list of two vectors, containing a positive/negative number of
reads of the input positive/negative windows
UofABioinformaticsHub/strandCheckR documentation built on Aug. 15, 2021, 9:08 a.m.
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Description Usage Arguments Value
Description
Calculate the number of reads coming from '+'/'-' strands in all sliding wndows
Usage
1 | .calculateStrandNbReads(winPosAlignments, winNegAlignments)
|
Arguments
winPosAlignments |
a list that has a 'Win' field that contains information of sliding windows overalapping positive reads |
winNegAlignments |
a a list that has a 'Win' field that contains information of sliding windows overalapping negative reads |
Value
a list of two vectors, containing a positive/negative number of reads of the input positive/negative windows
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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