dot-calculateStrandCoverage: Calculate the strand information based on coverage
In UofABioinformaticsHub/strandCheckR: Calculate strandness information of a bam file
Description
Usage
Arguments
Value
Description
Calculate the coverage coming from '+'/'-' reads
in all sliding windows
Usage
1
2
.calculateStrandCoverage(winPosAlignments, winNegAlignments,
winWidth = 1000L, winStep = 100L)
Arguments
winPosAlignments
a list that has a 'Coverage' field containing
coverage coming from positive reads
winNegAlignments
a list that has a 'Coverage' field containing
coverage coming from negative reads
winWidth
the length of the sliding window, 1000 by default.
winStep
the step length to sliding the window, 100 by default.
Value
a list of two vectors, containing a positive/negative coverage of
the input positive/negative windows
UofABioinformaticsHub/strandCheckR documentation built on Aug. 15, 2021, 9:08 a.m.
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Description Usage Arguments Value
Description
Calculate the coverage coming from '+'/'-' reads in all sliding windows
Usage
1 2 | .calculateStrandCoverage(winPosAlignments, winNegAlignments,
winWidth = 1000L, winStep = 100L)
|
Arguments
winPosAlignments |
a list that has a 'Coverage' field containing coverage coming from positive reads |
winNegAlignments |
a list that has a 'Coverage' field containing coverage coming from negative reads |
winWidth |
the length of the sliding window, 1000 by default. |
winStep |
the step length to sliding the window, 100 by default. |
Value
a list of two vectors, containing a positive/negative coverage of the input positive/negative windows
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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