dot-keptReadFragment: Calculate the read fragments to be kept
In UofABioinformaticsHub/strandCheckR: Calculate strandness information of a bam file
Description
Usage
Arguments
Value
Description
Calculate the keeping probability of each read fragment based
on the keeping probability of the windows containing it. Then get the list
of read fragments to be kept.
Usage
1
.keptReadFragment(fragments, keptProbaW)
Arguments
fragments
an IRange object defind the starting, ending position of
each fragment
keptProbaW
an Rle object define the kept probability of each
sliding window
Value
an integer vector of read fragment indices to be kept
UofABioinformaticsHub/strandCheckR documentation built on Aug. 15, 2021, 9:08 a.m.
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Description Usage Arguments Value
Description
Calculate the keeping probability of each read fragment based on the keeping probability of the windows containing it. Then get the list of read fragments to be kept.
Usage
1 | .keptReadFragment(fragments, keptProbaW)
|
Arguments
fragments |
an IRange object defind the starting, ending position of each fragment |
keptProbaW |
an Rle object define the kept probability of each sliding window |
Value
an integer vector of read fragment indices to be kept
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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