dismountWorkflow: Full workflow with parallel retries, result categorization...

Description Usage Arguments Author(s)

Description

Full workflow with parallel retries, result categorization and dismount/precond run

Usage

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dismountWorkflow(modFileName, retries = 9, doParaRetries = TRUE,
  doPrecond = FALSE, doDismount = TRUE, doCompParaRetries = TRUE,
  rerunDirName, degree = 0.99, seed = 20160504,
  dismountPertDirections = 1)

Arguments

modFileName

The model file to use. Default is "run83.mod".

retries

The number of retries to run as part of the initial parallel retries.

doParaRetries

Whether or not the parallel retries should be run. Default is TRUE. If FALSE then a rerunDirName is expected.

doPrecond

Whether or not preconditioning should be run on all samples. Default is FALSE

doDismount

Whether or not dismount should be run on all samples. Default is TRUE.

rerunDirName

If doParaRetries is FALSE, then this directory will be assumed to contain a parallel retries run with model files and outputs to use for dismount and/or precond. No default.

dismountPertDirections

Perturbation direction.

Author(s)

Henrik Bjugård Nyberg - henrik.b.nyberg@farmbio.uu.se


UppsalaHenrik/dismount documentation built on May 9, 2019, 9:40 p.m.