runDismount: Run dismount (isestimable)

Description Usage Arguments Author(s)

Description

Runs dismount (aka isestimable). Currently limited to slurm queue submission. This function is in need of some TLC.

Usage

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runDismount(modelFileName, dismountPath = paste0("/blue/home/USER/",
  "yasao745/PsN4_4_ver_YA/", "bin/isestimable"), wait = FALSE, pertDir = 1,
  logging = FALSE, runOnSlurm = FALSE)

Arguments

modelFileName

The name of the model file. No default

dismountPath

Path to the isestimable/dismount

wait

Wraps the wait option in system(), which specifies whether to wait for the system call to complete before continuing in R (TRUE) or not wait after submission (FALSE). Default is FALSE

pertDir

Perturbation direction. 1 for standard and 0 (or any other) for opposite

logging

Whether to log the command line outputs to a text file or not. Default is FALSE.

runDismount()

Author(s)

Henrik Bjugård Nyberg - henrik.b.nyberg@farmbio.uu.se


UppsalaHenrik/dismount documentation built on May 9, 2019, 9:40 p.m.