dynacof.jl: Run DynACof.jl (Julia version of DynACof)

In VEZY/DynACof: A Process-Based Model to Study Growth, Yield and Ecosystem Services of Coffee Agroforestry Systems

Description

Make a simulation using the julia version of DynACof, DynACof.jl. This implementation is much faster, with run-times ~100x faster. Need Julia installed on the computer and in the path.

Usage

dynacof.jl(
  Period = NULL,
  WriteIt = FALSE,
  Inpath = NULL,
  output_f = ".RData",
  Outpath = Inpath,
  Simulation_Name = "DynACof",
  FileName = list(Site = "site.jl", Meteo = "meteorology.txt", Soil = "soil.jl", Coffee
    = "coffee.jl", Tree = NULL),
  ...
)

Arguments

Period	Period of time to be simulated, see details. Default: NULL
WriteIt	If TRUE, write the outputs to disk using write.results(), see details. Default: FALSE
Inpath	Path to the input parameter list folder, Default: NULL (take package values)
output_f	Output format. If output_f = ".RData", the output list will be saved as a unique .RData file. Any other value: write the output list in several .csv and .txt files. Default: .RData
Outpath	Path pointing to the folder were the results will be writen, Default: Outpath = Inpath
Simulation_Name	Character name of the simulation file name if WriteIt = T. Default: "DynACof"
FileName	A list of input file names : Site Site parameters file name, see details. Default: 'site.jl' Meteo Meteo parameters file name, see details. Default: 'meteorology.txt' Soil Soil parameters file name, see details. Default: 'soil.jl' Coffee Coffee parameters file name, see details. Default: 'coffee.jl' Tree Shade tree parameters file name, see details. Default: NULL
...	Further arguments to pass to write.results().

Value

Return invisibly a list containing three objects (Parameters, Meteo and Sim). See DynACof() for more details.

Note

If the user needs default values from the package for FileName names, put their values to "package". Careful: Always call dynacof.jl_setup() before runnning dynacof.jl. See example.

Examples

## Not run: 
# Setting up julia + DynACof.jl:
dynacof.jl_setup()

# Running a simulation:
# First, downloading an example meteorology file:
met_file= tempfile()
m= "https://raw.githubusercontent.com/VEZY/DynACof.jl_inputs/master/meteorology.txt"
download.file(m,met_file)

S= dynacof.jl(Inpath= dirname(met_file), FileName=list(Site="package",Meteo=basename(met_file),
                                                       Soil="package",Coffee="package",Tree=NULL))
unlink(met_file)
# Plotting the coffee LAI along the simulation:
plot(S$Meteo$Date,S$Sim$LAI)

## End(Not run)

VEZY/DynACof documentation built on Feb. 3, 2021, 8:52 p.m.