API for VEuPathDB/microbiomeComputations
Compute Results for Microbiome Analyses
| Global functions | |
|---|---|
| AbsoluteAbundanceData | Man page |
| AbsoluteAbundanceData-class | Man page |
| AbundanceData | Man page |
| AbundanceData-class | Man page |
| Comparator | Man page |
| Comparator-class | Man page |
| SampleMetadata | Man page |
| SampleMetadata-class | Man page |
| alphaDiv | Man page |
| betaDiv | Man page |
| check_absolute_abundance_data | Source code |
| check_abundance_data | Source code |
| check_comparator | Source code |
| check_sample_metadata | Source code |
| cleanComparatorVariable | Source code |
| correlation,AbundanceData,AbundanceData-method | Man page |
| correlation,AbundanceData,missing-method | Man page |
| differentialAbundance | Man page |
| getAbundances | Man page |
| getGroupLabels | Man page |
| getIdColumns | Man page |
| getSampleMetadata | Man page |
| isNAorZero | Source code |
| jsd | Source code |
| microbiomeComputations | Man page |
| microbiomeComputations-package | Man page |
| pruneFeatures | Man page |
| rankTaxa | Source code |
| rankedAbundance | Man page |
| removeIncompleteSamples | Man page |
| selfCorrelation,AbundanceData-method | Man page |
| selfCorrelation,SampleMetadata-method | Man page |
| validateIdColumns | Source code |
