rankedAbundance: Ranked abundance

In VEuPathDB/microbiomeComputations: Compute Results for Microbiome Analyses

Ranked abundance

Description

This function returns abundances, ranked by a selected ranking function

Usage

rankedAbundance(
  data,
  method = c("median", "max", "q3", "variance"),
  cutoff = 10,
  verbose = c(TRUE, FALSE)
)

Arguments

data	AbundanceData object
method	string defining the ranking strategy by which to order the taxa. Accepted values are 'median','max','q3',and 'variance'. Note that taxa that return a value of 0 for a given method will not be included in the results.
cutoff	integer indicating the maximium number of taxa to be kept after ranking.
verbose	boolean indicating if timed logging is desired

Value

ComputeResult object

VEuPathDB/microbiomeComputations documentation built on March 1, 2024, 7:21 a.m.