betaDiv: Beta diversity

In VEuPathDB/microbiomeComputations: Compute Results for Microbiome Analyses

Beta diversity

Description

This function returns pcoa coordinates calculated from the beta diversity dissimilarity matrix.

Usage

betaDiv(
  data,
  method = c("bray", "jaccard", "jsd"),
  k = 2,
  verbose = c(TRUE, FALSE)
)

Arguments

data	AbundanceData object
method	string defining the the beta diversity dissimilarity method. Accepted values are 'bray','jaccard', and 'jsd'
k	integer determining the number of pcoa axes to return
verbose	boolean indicating if timed logging is desired

Value

ComputeResult object

VEuPathDB/microbiomeComputations documentation built on March 1, 2024, 7:21 a.m.