Collections-methods: Create Collections
In VEuPathDB/veupathUtils: General Helper Functions for VEuPathDB Projects

Collections

R Documentation

Create Collections

Description

This is a constructor for the Collections class. It creates a Collections object for use in a Microbiome Dataset. A Collections object is a list of Collection objects.

Usage

Collections(collections, ontology)

## S4 method for signature 'missing,missing'
Collections(collections, ontology)

## S4 method for signature 'list,missing'
Collections(collections, ontology)

## S4 method for signature 'list,data.frame'
Collections(collections, ontology)

## S4 method for signature 'data.frame,missing'
Collections(collections, ontology)

## S4 method for signature 'data.frame,data.frame'
Collections(collections, ontology)

## S4 method for signature 'Collection,missing'
Collections(collections, ontology)

## S4 method for signature 'character,missing'
Collections(collections, ontology)

Arguments

`collections`	A list of Collection objects, a data.frame containing multiple collections, or a character vector containing a file path to a data.frame
`ontology`	A data.frame containing the ontology for the dataset