CountDataCollection-class: Count Data
In VEuPathDB/veupathUtils: General Helper Functions for VEuPathDB Projects
CountDataCollection-class R Documentation
Count Data
Description
A class for working with count data, including microbial or genetic assays.
Slots
dataA data.frame of integer abundance counts with genes (species, etc.) as columns and samples as rows
sampleMetadataA data.frame of metadata about the samples with samples as rows and metadata variables as columns
recordIdColumnThe name of the column containing IDs for the samples. All other columns will be treated as abundance values.
ancestorIdColumnsA character vector of column names representing parent entities of the recordIdColumn.
imputeZeroA logical indicating whether NA/ null values should be replaced with zeros.
VEuPathDB/veupathUtils documentation built on Feb. 8, 2025, 12:29 p.m.
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| CountDataCollection-class | R Documentation |
Count Data
Description
A class for working with count data, including microbial or genetic assays.
Slots
dataA data.frame of integer abundance counts with genes (species, etc.) as columns and samples as rows
sampleMetadataA data.frame of metadata about the samples with samples as rows and metadata variables as columns
recordIdColumnThe name of the column containing IDs for the samples. All other columns will be treated as abundance values.
ancestorIdColumnsA character vector of column names representing parent entities of the recordIdColumn.
imputeZeroA logical indicating whether NA/ null values should be replaced with zeros.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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