getCollectionData: Get data.table of values from Collection
In VEuPathDB/veupathUtils: General Helper Functions for VEuPathDB Projects

getCollectionData

R Documentation

Get data.table of values from Collection

Description

Returns a data.table of collection values, respecting the imputeZero slot.

Usage

getCollectionData(
  object,
  variableNames = NULL,
  ignoreImputeZero = c(FALSE, TRUE),
  includeIds = c(TRUE, FALSE),
  verbose = c(TRUE, FALSE)
)

## S4 method for signature 'Collection'
getCollectionData(
  object,
  variableNames = NULL,
  ignoreImputeZero = c(FALSE, TRUE),
  includeIds = c(TRUE, FALSE),
  verbose = c(TRUE, FALSE)
)

Arguments

`object`	Collection
`variableNames`	A character vector representing the name of the variables to return. If NULL, returns all variables
`ignoreImputeZero`	boolean indicating whether we should respect the imputeZero slot
`includeIds`	boolean indicating whether we should include recordIdColumn and ancestorIdColumns
`verbose`	boolean indicating if timed logging is desired