SPADEVizR_unimodality: #########################################################################################...

In VallinP/easyFlow: easyFlow : An easy to do unsupervised analysis of mass and flow cytometry data

Description

Patrice Vallin, easyFlow, Sept 2019.

Usage

SPADEVizR_unimodality(df = NULL, cluster = NULL, clusters = NULL,
  clustering.markers = NULL, uniform.test = "unimodality",
  th.pvalue = 0.05, th.IQR = 2, density.PDFfile = NULL,
  density.PDFfile.dim = c(8, 5), heatmap.PDFfile = NULL,
  tile.color = "black", verbose = TRUE)

Arguments

df	a matrix of numerical values
cluster	a null value
clusters	a null value
clustering.markers	an array of character string
uniform.test	a character string
th.pvalue	a numerical value
density.PDFfile	a character string
density.PDFfile.dim	an array of 2 numerical values
heatmap.PDFfile	a character string
verbose	a logical

Details

Adapted from : Guillaume Gautreau et al., Bioinformatics, March 2017 https://academic.oup.com/bioinformatics/article/33/5/779/2662307 https://github.com/tchitchek-lab/SPADEVizR ########################################################################################

Value

uniform.res

Source

https://academic.oup.com/bioinformatics/article/33/5/779/2662307

https://github.com/tchitchek-lab/SPADEVizR

VallinP/easyFlow documentation built on Dec. 18, 2021, 6:14 p.m.