BRENDAPartOf: BRENDAPartOf
In Vanessa104/devsig: Development testing
Description
Usage
Arguments
Value
Examples
Description
Get the tissue a term is part of, if available. The function
only retrieves the information directly saved in the obo file, and will not
automatically find "ancestors" in "part of" relationship.
For example, if A is part of B, B is part of C,
the function will NOT automatically return C in the result of A, unless
the relationship between A and C is specified in the obo file.
updated 07/2020
Usage
1
BRENDAPartOf(x, obo = BRENDAobo)
Arguments
x
A BRENDA term id, term name, or synonym of a term.
obo
Optional. The ontology file. BRENDA OBO file will be loaded if not provided.
Value
If input is a valid BRENDA term, return a dataframe of the term id
and term name the input is part of. Some terms are part of multiple terms.
Examples
1
2
3
BRENDAPartOf("BTO:0000187")
BRENDAPartOf("myeloblast")
BRENDAPartOf("BTO:0001732")
Vanessa104/devsig documentation built on Oct. 9, 2020, 2:28 a.m.
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Description Usage Arguments Value Examples
Description
Get the tissue a term is part of, if available. The function only retrieves the information directly saved in the obo file, and will not automatically find "ancestors" in "part of" relationship. For example, if A is part of B, B is part of C, the function will NOT automatically return C in the result of A, unless the relationship between A and C is specified in the obo file. updated 07/2020
Usage
1 | BRENDAPartOf(x, obo = BRENDAobo)
|
Arguments
x |
A BRENDA term id, term name, or synonym of a term. |
obo |
Optional. The ontology file. BRENDA OBO file will be loaded if not provided. |
Value
If input is a valid BRENDA term, return a dataframe of the term id and term name the input is part of. Some terms are part of multiple terms.
Examples
1 2 3 | BRENDAPartOf("BTO:0000187")
BRENDAPartOf("myeloblast")
BRENDAPartOf("BTO:0001732")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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