BRENDASearch: BRENDASearch

In Vanessa104/devsig: Development testing

Description

search for ontology term in an obo file or a vector of all ontology term name updated 07/2020

Usage

BRENDASearch(x, obo = BRENDAobo, contain_all = TRUE)

Arguments

x	A string or character vector to search for. x will be divided into different search patterns by space. See examples below.
obo	The ontology file or a character vector of all possible term names. Optional. BRENDA OBO file will be loaded if not provided.
contain_all	if TRUE, will only return the results contain all search terms. if FALSE, will return results contain any of the given pattern.

Value

matrix including search result

Examples

BRENDASearch("MDA MB cell", contain_all = TRUE) 
# search for results that contain "MDA" "MB" and "cell"
BRENDASearch(c("MDA MB", "cell"), contain_all = TRUE) 
# same as above
BRENDASearch(c("MDA-MB", "SUM"), contain_all = FALSE) 
# search for results that contain either "MDA-MB" or "SUM"

Vanessa104/devsig documentation built on Oct. 9, 2020, 2:28 a.m.