Man pages for VariantEffect/mavevis
Visualization for MaveDB
| axisHack | Helper function to draw staggered oversized labels on the... |
| calc.conservation | Calculate position-wise conservation from a Uniprot accession |
| calc.strucfeats | Calculate structural features |
| check.async.progress | Check progress on asynchronous job |
| dashboard | Draw dashboard for scoreset |
| dashboard.async.run | Launch asynchronous dashboard job |
| fetch.domains.pfam | Find Pfam domains for a Uniprot accession |
| fetch.domains.uniprot | Find domains for a Uniprot accession |
| find.pdbs | Find PDB structures for a Uniprot accession |
| genophenogram | Draw genophenogram plot |
| genophenogram.nc | Draw genophenogram plot for nucleotide sequences |
| getCacheFile | Find cache file location by name |
| getUniprotSeq | Retrieve Uniprot Sequence |
| makeUUID | Create universally unique ID (UUIDv4) |
| new.amasLite | Calculate AMAS conservation |
| new.structure | Create new Structure object |
| new.trackdrawer | New Trackdrawer object |
| pdb.informative | Select smallest informative subset of PDB structures |
| query.alphafold | Query Alphafold |
| query.pdb | Query PDB |
| retrieve.async.result.file | Retrieve result file from asynchronous job |
| run.dssp | Run DSSP on a PDB structure |
| run.sasa | Run FreeSASA on a PDB structure |
| subcomplex.combos | Generate PDB files for complex components |
