genophenogram: Draw genophenogram plot

In VariantEffect/mavevis: Visualization for MaveDB

Draw genophenogram plot

Description

Draws a genophenogram plot from given data

Usage

genophenogram(
  wt.aa,
  pos,
  mut.aa,
  score,
  syn.med,
  stop.med,
  error = NULL,
  a = 0,
  grayBack = FALSE,
  img.width = 12,
  tracks = NULL,
  pixelMap = FALSE
)

Arguments

wt.aa	wildtype amino acid sequence as a vector of single characters.
pos	vector of amino acid positions
mut.aa	vector of mutant AAs
score	vector of scores
error	vector of stderr values
a	bezier transformation intensity (with -0.5 <= a <= 0.5)
grayBack	draw a gray background for incomplete maps
img.width	optional parameter to inform the drawing function of the chosen image width, allowing it to adjust the size of the legend
tracks	an optional trackdrawer object to add structural information to the plot
pixelMap	boolean flag, whether or not to return a pixel coordinate map object

Value

NULL, or a pixel coordinate map, i.e. a list with two data frames

VariantEffect/mavevis documentation built on Oct. 26, 2023, 3:33 a.m.