query.pdb: Query PDB

In VariantEffect/mavevis: Visualization for MaveDB

Query PDB

Description

Queries the Protein Data Bank (PDB) for protein structure data for a given database accession and writes the result to file

Usage

query.pdb(pdb.acc, pdb.file = paste0(pdb.acc, ".pdb"))

Arguments

pdb.acc	the PDB accession to query
pdb.file	the name of the file to which the output will be written.

Value

the name of the output file.

Examples

## Not run: 
#with a pre-determined output file
outfile <- "sumo_conjugase_structure.pdb"
query.pdb("3UIP",outfile)

#with an autogenerated output file
outfile <- query.pdb("3UIP")

## End(Not run)

VariantEffect/mavevis documentation built on Oct. 26, 2023, 3:33 a.m.