run.sasa: Run FreeSASA on a PDB structure
In VariantEffect/mavevis: Visualization for MaveDB
View source: R/calcStrucFeats.R
run.sasa R Documentation
Run FreeSASA on a PDB structure
Description
Calculates solvent accessible surface area on a given structure using the
external software FreeSASA, which must be installed and available via $PATH.
Usage
run.sasa(pdb.file)
Arguments
pdb.file
The PDB file on which to run FreeSASA
Value
a data.frame with the output of FreeSASA
Examples
## Not run:
sasa <- run.sasa("3UIP.pdb")
## End(Not run)
VariantEffect/mavevis documentation built on Oct. 26, 2023, 3:33 a.m.
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View source: R/calcStrucFeats.R
| run.sasa | R Documentation |
Run FreeSASA on a PDB structure
Description
Calculates solvent accessible surface area on a given structure using the external software FreeSASA, which must be installed and available via $PATH.
Usage
run.sasa(pdb.file)
Arguments
pdb.file |
The PDB file on which to run FreeSASA |
Value
a data.frame with the output of FreeSASA
Examples
## Not run:
sasa <- run.sasa("3UIP.pdb")
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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