Files in Vitek-Lab/MSstatsSampleSize

Simulation tool for optimal design of high-dimensional MS-based proteomics experiment

.Rbuildignore

.gitignore

DESCRIPTION

MSstatsSampleSize.Rproj

NAMESPACE

R/MSstatsSSE_shiny.R R/MSstatsSampleSize.R R/Methods.R R/dataDoc.R R/designSampleSizeClassification.R R/designSampleSizeClassificationPlots.R R/designSampleSizeHypothesisTestingPlot.R R/designSampleSizePCAplot.R R/estimateVar.R R/h2o_methods.R R/meanSDplot.R R/simulateDataset.R README.md

data/OV_SRM_train.rda

data/OV_SRM_train_annotation.rda

data/classification_results.rda

data/simulated_datasets.rda

data/variance_estimation.rda

inst/NEWS.rd

inst/sample_size_estimator/Report.Rmd inst/sample_size_estimator/global.R inst/sample_size_estimator/help_mds/b_group.md inst/sample_size_estimator/help_mds/caret_rf.md inst/sample_size_estimator/help_mds/checkbox_inputs.md inst/sample_size_estimator/help_mds/diff_prot.md inst/sample_size_estimator/help_mds/exp_fc.md inst/sample_size_estimator/help_mds/fc_values.md inst/sample_size_estimator/help_mds/h2o_eps_sdev.md inst/sample_size_estimator/help_mds/h2o_f_assignment.md inst/sample_size_estimator/help_mds/h2o_family.md inst/sample_size_estimator/help_mds/h2o_iters.md inst/sample_size_estimator/help_mds/h2o_laplace.md inst/sample_size_estimator/help_mds/h2o_link.md inst/sample_size_estimator/help_mds/h2o_min_sdev.md inst/sample_size_estimator/help_mds/h2o_nfold.md inst/sample_size_estimator/help_mds/h2o_solver.md inst/sample_size_estimator/help_mds/h2o_stopping_metric.md inst/sample_size_estimator/help_mds/n_samp_grp.md inst/sample_size_estimator/help_mds/n_sim.md inst/sample_size_estimator/help_mds/n_val_samp_grp.md inst/sample_size_estimator/help_mds/prot_num.md inst/sample_size_estimator/help_mds/prot_prop.md inst/sample_size_estimator/help_mds/sel_sim_prot.md inst/sample_size_estimator/help_mds/sim_val.md

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inst/sample_size_estimator/img/sim1.JPG

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inst/sample_size_estimator/params.rds

inst/sample_size_estimator/scripts/Methods.R inst/sample_size_estimator/scripts/designSampleSizeClassification.R inst/sample_size_estimator/scripts/designSampleSizeClassificationPlots.R inst/sample_size_estimator/scripts/designSampleSizeHypothesisTestingPlot.R inst/sample_size_estimator/scripts/designSampleSizePCAplot.R inst/sample_size_estimator/scripts/estimateVar.R inst/sample_size_estimator/scripts/h2o_methods.R inst/sample_size_estimator/scripts/meanSDplot.R inst/sample_size_estimator/scripts/simulateDataset.R inst/sample_size_estimator/server.R inst/sample_size_estimator/ui.R inst/sample_size_estimator/www/Welcome.md

inst/sample_size_estimator/www/ab.PNG

inst/sample_size_estimator/www/an.PNG

inst/sample_size_estimator/www/data_import.Rmd inst/sample_size_estimator/www/example.Rmd inst/sample_size_estimator/www/import_data.md man/MSstatsSampleSize.Rd man/OV_SRM_train.Rd man/OV_SRM_train_annotation.Rd man/classification_results.Rd man/designSampleSizeClassification.Rd man/designSampleSizeClassificationPlots.Rd man/designSampleSizeHypothesisTestingPlot.Rd man/designSampleSizePCAplot.Rd man/dot-catch_faults.Rd man/dot-classification_model.Rd man/dot-classification_performance.Rd man/dot-data_checks.Rd man/dot-do_prcomp.Rd man/dot-feature_importance.Rd man/dot-format_summary_table.Rd man/dot-identify_optimal.Rd man/dot-logGeneration.Rd man/dot-log_write.Rd man/dot-pca_plot.Rd man/dot-plot_acc.Rd man/dot-plot_imp.Rd man/dot-quantile_eval.Rd man/dot-randomImputation.Rd man/dot-sampleSimulation.Rd man/dot-status.Rd man/estimateVar.Rd man/h2o_config.Rd man/meanSDplot.Rd man/qc_boxplot.Rd man/simulateDataset.Rd man/simulate_grid.Rd man/simulated_datasets.Rd man/ss_classify_caret.Rd man/ss_classify_h2o.Rd man/theme_MSstats.Rd man/variance_estimation.Rd tests/testthat.R tests/testthat/test-designSampleSizeClassification.R tests/testthat/test-estimateVar.R tests/testthat/test-simulateDataset.R vignettes/MSstatsSampleSize.Rmd

Vitek-Lab/MSstatsSampleSize documentation built on Aug. 28, 2020, 10:39 a.m.