Description Usage Arguments Value
Find frequent motifs in a set of sequences using the Motif_All algorithm
1 2 | find_frequent_motifs(x, N_support = NULL, support = 0.05, k_max = NULL,
central_letter = NULL, showProgress = TRUE)
|
x |
a vector of sequences (with a fixed length). Defined as the background set |
N_support |
minimum support of motifs in the foreground set (number of counts). Has priority over |
support |
minimum support of motifs in the foreground set (frequence) |
k_max |
maximum size of motifs (set to NULL to ignore) |
central_letter |
search only for motifs that have the given character in central position |
showProgress |
show progress bar in console |
a list of motifs
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