find_frequent_motifs: Find frequent motifs in a set of sequences using the...

Description Usage Arguments Value

Description

Find frequent motifs in a set of sequences using the Motif_All algorithm

Usage

1
2
find_frequent_motifs(x, N_support = NULL, support = 0.05, k_max = NULL,
  central_letter = NULL, showProgress = TRUE)

Arguments

x

a vector of sequences (with a fixed length). Defined as the background set

N_support

minimum support of motifs in the foreground set (number of counts). Has priority over support

support

minimum support of motifs in the foreground set (frequence)

k_max

maximum size of motifs (set to NULL to ignore)

central_letter

search only for motifs that have the given character in central position

showProgress

show progress bar in console

Value

a list of motifs


VoisinneG/MotifAll documentation built on May 7, 2019, 8:37 a.m.