find_frequent_motifs: Find frequent motifs in a set of sequences using the...

Description Usage Arguments Value

View source: R/MotifAll.R

Description

Find frequent motifs in a set of sequences using the Motif_All algorithm

Usage

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find_frequent_motifs(x, N_support = NULL, support = 0.05, k_max = NULL,
  central_letter = NULL, showProgress = TRUE)

Arguments

x

a vector of sequences (with a fixed length). Defined as the background set

N_support

minimum support of motifs in the foreground set (number of counts). Has priority over support

support

minimum support of motifs in the foreground set (frequence)

k_max

maximum size of motifs (set to NULL to ignore)

central_letter

search only for motifs that have the given character in central position

showProgress

show progress bar in console

Value

a list of motifs


VoisinneG/MotifAll documentation built on July 23, 2018, 4:13 a.m.