get_motif_score: Compute the enrichment score for a list of motifs in the...

In VoisinneG/MotifAll: Analysis of motifs in protein sequences

Description

Compute the enrichment score for a list of motifs in the foreground set as compared to the background set

Usage

get_motif_score(x, idx_select, motif_list, showProgress = TRUE,
  match_central_letter = TRUE)

Arguments

x	a vector of sequences (with a fixed length). Defined as the background set
idx_select	Indexes of foreground sequences in x. Note that the foreground set must be a subset of the background set.
motif_list	list of motifs
showProgress	show progress bar in console
match_central_letter	keep only sequences that have the same central letter as the motif

Value

A data frame summarizing motif enrichment analysis in foreground set

VoisinneG/MotifAll documentation built on May 7, 2019, 8:37 a.m.