get_motif_score: Compute the enrichment score for a list of motifs in the...

Description Usage Arguments Value

View source: R/MotifAll.R

Description

Compute the enrichment score for a list of motifs in the foreground set as compared to the background set

Usage

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get_motif_score(x, idx_select, motif_list, showProgress = TRUE,
  match_central_letter = TRUE)

Arguments

x

a vector of sequences (with a fixed length). Defined as the background set

idx_select

Indexes of foreground sequences in x. Note that the foreground set must be a subset of the background set.

motif_list

list of motifs

showProgress

show progress bar in console

match_central_letter

keep only sequences that have the same central letter as the motif

Value

A data frame summarizing motif enrichment analysis in foreground set


VoisinneG/MotifAll documentation built on July 23, 2018, 4:13 a.m.