eventHierarchy: List the children of something in a dataframe tree

In VonWebEinstein/ReactomeAPI:

Description

In a tree(e.g. a hierarchical structure for some species) represtented by a nested dataframe. children lists the children of whose.

Events (pathways and reactions) in Reactome are organised in a hierarchical structure for every species. By following all 'hasEvent' relationships, this method retrieves the full event hierarchy for any given species. The result is a list of tree structures, one for each TopLevelPathway. Every event in these trees is represented by a PathwayBrowserNode. The latter contains the stable identifier, the name, the species, the url, the type, and the diagram of the particular event.

Usage

children(whose, where, key = "stId")

reactomeEventHierarchy(species = "9606", silent = FALSE)

rtEventHierarchy(species = "9606", silent = FALSE)

Arguments

whose	string. an idendifier indicating key
where	list. the list tree including whose
key	string. name we search depends on
species	string. Allowed species filter: SpeciesName (eg: Homo sapiens) SpeciesTaxId (eg: 9606)
silent	logical. Whether print error messages on the screen.

Value

A data frame.

See Also

reactomeEvent

VonWebEinstein/ReactomeAPI documentation built on May 9, 2019, 10:02 p.m.