interactor: Molecule interactors

In VonWebEinstein/ReactomeAPI:

Description

Retrieve clustered interaction, details or summary, sorted by score, of single or multiple given accession(s) by resource i.e. PSICQUIC method. Retrieve a detailed(summary) interaction information of given accession(s) i.e. static method.

Usage

reactomeInteractor(acc, resource = 'Reactome', type = 'psicquic',
                   detail = TRUE, silent = FALSE)
reactomeInteractor(acc, type = 'static', detail = TRUE, page = -1,
                   pageSize = -1, silent = FALSE)
reactomeInteractor(acc, type = 'static', detail = FALSE, silent = FALSE)

PSICQUIC_Provier(silent = FALSE)

Arguments

acc	string. Interactor accession(s) (or identifier(s)).
resource	string. PSICQUIC Resource.
type	string. psicquic: PSICQUIC method; static: static method.
detail	logical. Return details or summary.
page	interger. For paginating the results.
pageSize	interge. Number of results to be retrieved.
silent	logical. Run quitely.

Details

PSICQUIC_Provier returns the list of PSICQUIC Proviers.

Value

• logical FALSE: When an error happens.

• list: When query details of multiple entries.

• dataframe: Others.

Examples

interactors = reactomeInteractor(acc = 'Q13501', resource = 'MINT', type = 'psicquic')
interactors = reactomeInteractor(acc = 'Q13501', resource = 'MINT', type = 'static')

interactors = reactomeInteractor(acc = c('Q13501','Q16543'),
                                 resource = 'MINT', type = 'psiquic')
interactors = reactomeInteractor(acc = c('Q13501','Q16543'),
                                 resource = 'MINT', type = 'static')

VonWebEinstein/ReactomeAPI documentation built on May 9, 2019, 10:02 p.m.