entity: PhysicalEntity Queries

In VonWebEinstein/ReactomeAPI:

Description

Retrieves the subunits, structures or other forms of a given entity

Usage

rtEntity(id, queryType, simplify = TRUE)

Arguments

id	a character vector of identifiers of the complex, entity or the PhysicalEntity that you want to query
queryType	a character vector that specify the query type. can be subunits, componentOf, or otherForms.
simplify	attempt to reduce the result to a data frame when length of id is 1.

Details

queryType = subunits. Retrieves the list of subunits that constitute any given complex. In case the complex comprises other complexes, this method recursively breaks all of them into their subunits.

When queryType = componentOf, this function will retrieves the list of structures (Complexes and Sets) that include the given entity as their component.It should be mentioned that the list includes only simplified entries (type, names, ids) and not full information about each item.

queryType = otherForms. Retrieves a list containing all other forms of the given PhysicalEntity. These other forms are PhysicalEntities that share the same ReferenceEntity identifier, e.g. PTEN H93R[R-HSA-2318524] and PTEN C124R[R-HSA-2317439] are two forms of PTEN.

Value

a list of tha same length of id, with ecah element corresponding to the query result of one of id.

Examples

rtEntity("R-HSA-5674003", "subunits")
rtEntity("R-HSA-199420", "componentOf")
rtEntity(id = c("R-HSA-5674003", "R-HSA-199420"),
         queryType= c("subunits", "componentOf"))

VonWebEinstein/ReactomeAPI documentation built on May 9, 2019, 10:02 p.m.