pubMedSearch: return cleaned abstracts from pubmed from searched key words

In WMBEdmands/CompMS2miner: an automatable metabolite identification, visualization and data-sharing R package for high-resolution LC-MS datasets

Description

return cleaned abstracts from pubmed from searched key words

Usage

pubMedSearch(keys = NULL, n = 500, maxChar = 50, ...)

Arguments

keys	character vector of compound names to search pubmed with
n	numeric maximum number of results to return. The maximum and default is 500.
maxChar	numeric maximum number of characters in cleaned abstract words to return.
...	further arguments to the cleanAbstracts function.

Value

a list containing 3 named elements: 1. titles character vector of Abstract title(s) 2. abs character vector of abstract text(s). 3. clAbs clean abstract word frequency data.frame with column names 'word' and 'freq'.

See Also

PubMedWordcloud, getAbstracts, cleanAbstracts.

WMBEdmands/CompMS2miner documentation built on May 9, 2019, 10:02 p.m.