Man pages for WWXkenmo/ENIGMA_test
dEcoNvolutIon method based on reGularized MAtrix completion
| AnyMatrix-class | # Class definitions |
| batch_correct | Remove batch effect with bulk and reference |
| cell_deconvolve_trace | Calculate the GEP of each cell types in bulk samples |
| clean_model | Clean the trained models for ENIGMA objects |
| create_ENIGMA | Create a new ENIGMA object |
| ENIGMA-class | The ENIGMA Class |
| ENIGMA_L2_max_norm | ENIGMA maximum L2 norm version |
| ENIGMA_trace_norm | ENIGMA trace norm version |
| FindCSE_DEG | Perform CTS-DEG analysis |
| GeneSigTest | Perform Gene Expression Significance Test |
| get_cell_proportion | Calculate the proportion of each cell types in bulk samples |
| hello | Hello, World! |
| plotLossCurve | plot multiple loss curves of ENIGMA object |
| plot_proportion | Plot proportion |
| sce2array | Convert the output of ENIGMA CSE profiles into array format |
| show-ENIGMA-method | Show method for ENIGMA |
