GeneSigTest: Perform Gene Expression Significance Test

In WWXkenmo/ENIGMA_test: dEcoNvolutIon method based on reGularized MAtrix completion

Perform Gene Expression Significance Test

Description

Perform Gene Expression Significance Test

Usage

GeneSigTest(
  object,
  nMC = 1000,
  p_threshold = 0.05,
  refine = FALSE,
  auto = TRUE,
  filtering = FALSE
)

Arguments

object	an ENIGMA object
nMC	the number of bootstrapping times
p_threshold	the threshold of pvalue to determine the significant gene
refine	whether perform refinement
auto	automatically determine whether perform refinement
filtering	perform gene filtering for enigma object. Default: TRUE

Value

A list object contain two object call: A binary matrix (row: gene, column: cell type) indicating which gene has high confidence to be accurated estimated pval: A p-value matrix (row: gene, column: cell type) indicating the confidence

WWXkenmo/ENIGMA_test documentation built on March 17, 2023, 4:56 a.m.