create_ENIGMA: Create a new ENIGMA object

In WWXkenmo/ENIGMA_test: dEcoNvolutIon method based on reGularized MAtrix completion

Create a new ENIGMA object

Description

Create a new ENIGMA object

Usage

create_ENIGMA(
  bulk,
  ref,
  ref_type = c("single_cell", "sort", "aggre"),
  meta_bulk = NULL,
  meta_ref = NULL,
  assay = NULL
)

Arguments

bulk	raw bulk data matrix
ref	raw reference data, could be single cell (matrix, SingleCellExperiment object or Seurat object) or FACS bulk
ref_type	Determine the reference type. Should be either "single_cell" or "sort".
meta_bulk	metadata of bulk matrix
meta_ref	metadata of reference

Value

an ENIGMA initial object

WWXkenmo/ENIGMA_test documentation built on March 17, 2023, 4:56 a.m.