generateStats: generateStats Statistics function to summarize expression...

In WaltersLab/doseR: doseR

generateStats Statistics function to summarize expression data of an s.e. object.

Description

generateStats is a summary function used on various expression data.

Usage

generateStats(se, groupings= NULL, mode_mean=TRUE, LOG2=TRUE)

Arguments

se	A SummarizedExperiment object.
groupings	A grouping (annotation column), e.g. groupings="something".
mode_mean	Boolean, Calculate RowMeans or RowMedians.
LOG2	Boolean, Calculate LOG2.

Details

This function completes summary statistics of the expression of the supplied s.e. object.

Value

Returns an invisible list of summary statistics, kruskal test and raw data of an s.e. object.

Author(s)

AJ Vaestermark, JR Walters.

References

The "doseR" package, 2018 (in press).

Examples

data(hmel.se)
generateStats(se, groupings="annotation.ZA")

WaltersLab/doseR documentation built on March 2, 2023, 7:01 p.m.