getLibsizes3: getLibsizes3 Get Lib Sizes.

In WaltersLab/doseR: doseR

getLibsizes3 Get Lib Sizes.

Description

getLibsizes3 method for SummarizedExp class object, derived from getLibsizes2

Usage

getLibsizes3(se, subset = NULL,
estimationType = c("quantile", "total",
"edgeR"),quantile = 0.75, ...)

Arguments

se	A SummarizedExperiment object.
subset	Value
estimationType	e.g. quantile, total, edgeR.
quantile	A quantile, expressed as e.g. 0.75.
...	Passthrough arguments.

Value

Libsize value

Author(s)

AJ Vaestermark, JR Walters.

References

The "doseR" package, 2018 (in press).

Examples

data(hmel.se)
getLibsizes3(se)

WaltersLab/doseR documentation built on March 2, 2023, 7:01 p.m.