se.DM: se.DM Function to convert SummarizedExperiment object to LME4...
In WaltersLab/doseR: doseR
se.DM R Documentation
se.DM Function to convert SummarizedExperiment object to LME4 input.
Description
This function generates LME4 input.
Usage
se.DM(se, weightByLL = TRUE)
Arguments
se
A SummarizedExperiment object containing FPKM values and at least
one annotation column.
weightByLL
Logical, weigh by log likelihood score.
Details
This function converts SummarizedExperiment object.
Value
Returns LME4 input.
Author(s)
AJ Vaestermark, JR Walters.
References
The "doseR" package, 2018 (in press).
Examples
data(hmel.se)
f_se <- quantFilter(se, lo.bound = 0.4, hi.bound = 0.5)
dm <- se.DM(f_se)
WaltersLab/doseR documentation built on March 2, 2023, 7:01 p.m.
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| se.DM | R Documentation |
se.DM Function to convert SummarizedExperiment object to LME4 input.
Description
This function generates LME4 input.
Usage
se.DM(se, weightByLL = TRUE)
Arguments
se |
A SummarizedExperiment object containing FPKM values and at least one annotation column. |
weightByLL |
Logical, weigh by log likelihood score. |
Details
This function converts SummarizedExperiment object.
Value
Returns LME4 input.
Author(s)
AJ Vaestermark, JR Walters.
References
The "doseR" package, 2018 (in press).
Examples
data(hmel.se) f_se <- quantFilter(se, lo.bound = 0.4, hi.bound = 0.5) dm <- se.DM(f_se)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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