se.DM: se.DM Function to convert SummarizedExperiment object to LME4...

se.DMR Documentation

se.DM Function to convert SummarizedExperiment object to LME4 input.

Description

This function generates LME4 input.

Usage

se.DM(se, weightByLL = TRUE)

Arguments

se

A SummarizedExperiment object containing FPKM values and at least one annotation column.

weightByLL

Logical, weigh by log likelihood score.

Details

This function converts SummarizedExperiment object.

Value

Returns LME4 input.

Author(s)

AJ Vaestermark, JR Walters.

References

The "doseR" package, 2018 (in press).

Examples

data(hmel.se)
f_se <- quantFilter(se, lo.bound = 0.4, hi.bound = 0.5)
dm <- se.DM(f_se)

WaltersLab/doseR documentation built on June 24, 2024, 2:51 a.m.