load_multiome4: Load matched scRNA-seq and scATAC-seq data to Seurat / Signac

In Wang-Cankun/rDeepMAPS: IRIS3-api

Description

Load matched scRNA-seq and scATAC-seq data to Seurat / Signac

Usage

load_multiome4(
  req,
  idx = 0,
  filename,
  jobid = "lymph",
  mode = "ATAC",
  min_cells = 1,
  min_genes = 200,
  nVariableFeatures = 2000,
  percentMt = 25,
  removeRibosome = FALSE,
  expr = NULL,
  label = NULL,
  species = "Human"
)

Arguments

req	request payload
idx	sample index
filename	string
mode	string
min_cells	number
min_genes	number
nVariableFeatures	number
percentMt	number
removeRibosome	boolean

Value

list of basic QC metrics

Wang-Cankun/rDeepMAPS documentation built on Jan. 28, 2022, 7:10 a.m.