| %>% |
Man page
|
| [,bcbioRNASeq,ANY,ANY,ANY-method |
Man page
|
| alphaSummary |
Man page
Man page
|
| alphaSummary,DESeqDataSet-method |
Man page
|
| alphaSummary,bcbioRNASeq-method |
Man page
|
| as |
Man page
|
| bcb_small |
Man page
|
| bcbio,bcbioRNASeq-method |
Man page
|
| bcbio<-,bcbioRNASeq-method |
Man page
|
| bcbioRNASeq |
Man page
|
| bcbioRNASeq-class |
Man page
|
| bcbioRNASeq-package |
Man page
|
| coerce |
Man page
|
| coerce-bcbioRNASeq-DESeqDataSet |
Man page
|
| contrastName |
Man page
Man page
|
| contrastName,DESeqResults-method |
Man page
|
| counts |
Man page
|
| counts,bcbioRNASeq-method |
Man page
|
| dds_small |
Man page
|
| deprecated |
Man page
|
| design,bcbioRNASeq-method |
Man page
|
| design<-,bcbioRNASeq,formula-method |
Man page
|
| download |
Man page
|
| genderMarkers |
Man page
|
| general |
Man page
|
| ggplot |
Man page
|
| glimpse |
Man page
|
| loadRNASeq |
Man page
|
| loadRNASeqRun |
Man page
|
| meltLog10 |
Man page
|
| metrics |
Man page
|
| metrics,bcbioRNASeq-method |
Man page
|
| plot53Bias |
Man page
|
| plot5Prime3PrimeBias |
Man page
Man page
|
| plot5Prime3PrimeBias,bcbioRNASeq-method |
Man page
|
| plotCorrelationHeatmap |
Man page
|
| plotCorrelationHeatmap,bcbioRNASeq-method |
Man page
|
| plotCountDensity |
Man page
Man page
|
| plotCountDensity,bcbioRNASeq-method |
Man page
|
| plotCountsPerGene |
Man page
Man page
|
| plotCountsPerGene,bcbioRNASeq-method |
Man page
|
| plotDEGHeatmap |
Man page
Man page
|
| plotDEGHeatmap,DESeqResults,DESeqDataSet-method |
Man page
|
| plotDEGHeatmap,DESeqResults,SummarizedExperiment-method |
Man page
|
| plotDEGHeatmap,DESeqResults,bcbioRNASeq-method |
Man page
|
| plotDEGPCA |
Man page
Man page
|
| plotDEGPCA,DESeqResults,DESeqDataSet-method |
Man page
|
| plotDEGPCA,DESeqResults,SummarizedExperiment-method |
Man page
|
| plotDEGPCA,DESeqResults,bcbioRNASeq-method |
Man page
|
| plotDispEsts |
Man page
|
| plotDispEsts,bcbioRNASeq-method |
Man page
|
| plotDispersion |
Man page
|
| plotExonicMappingRate |
Man page
Man page
|
| plotExonicMappingRate,bcbioRNASeq-method |
Man page
|
| plotGenderMarkers |
Man page
Man page
|
| plotGenderMarkers,DESeqDataSet-method |
Man page
|
| plotGenderMarkers,DESeqTransform-method |
Man page
|
| plotGenderMarkers,SummarizedExperiment-method |
Man page
|
| plotGenderMarkers,bcbioRNASeq-method |
Man page
|
| plotGene |
Man page
|
| plotGene,DESeqDataSet-method |
Man page
|
| plotGene,DESeqTransform-method |
Man page
|
| plotGene,SummarizedExperiment-method |
Man page
|
| plotGene,bcbioRNASeq-method |
Man page
|
| plotGeneDetectionSaturation |
Man page
|
| plotGeneHeatmap |
Man page
|
| plotGeneSaturation |
Man page
Man page
|
| plotGeneSaturation,bcbioRNASeq-method |
Man page
|
| plotGenesDetected |
Man page
Man page
|
| plotGenesDetected,bcbioRNASeq-method |
Man page
|
| plotIntronicMappingRate |
Man page
Man page
|
| plotIntronicMappingRate,bcbioRNASeq-method |
Man page
|
| plotMappedReads |
Man page
Man page
|
| plotMappedReads,bcbioRNASeq-method |
Man page
|
| plotMappingRate |
Man page
Man page
|
| plotMappingRate,bcbioRNASeq-method |
Man page
|
| plotMeanAverage |
Man page
Man page
|
| plotMeanAverage,DESeqResults-method |
Man page
|
| plotMeanSD |
Man page
Man page
|
| plotMeanSD,DESeqDataSet-method |
Man page
|
| plotMeanSD,bcbioRNASeq-method |
Man page
|
| plotPCA |
Man page
|
| plotPCA,DESeqDataSet-method |
Man page
|
| plotPCA,SummarizedExperiment-method |
Man page
|
| plotPCA,bcbioRNASeq-method |
Man page
|
| plotPCACovariates |
Man page
Man page
|
| plotPCACovariates,bcbioRNASeq-method |
Man page
|
| plotRRNAMappingRate |
Man page
Man page
|
| plotRRNAMappingRate,bcbioRNASeq-method |
Man page
|
| plotTotalReads |
Man page
Man page
|
| plotTotalReads,bcbioRNASeq-method |
Man page
|
| plotVolcano |
Man page
Man page
|
| plotVolcano,DESeqResults-method |
Man page
|
| prepareRNASeqTemplate |
Man page
|
| reexports |
Man page
Man page
Man page
Man page
Man page
Man page
Man page
Man page
Man page
|
| res_small |
Man page
|
| resultsTables |
Man page
Man page
|
| resultsTables,DESeqResults,DESeqDataSet-method |
Man page
|
| resultsTables,DESeqResults,missingOrNULL-method |
Man page
|
| rld_small |
Man page
|
| scale_color_hue |
Man page
|
| scale_color_manual |
Man page
|
| scale_colour_hue |
Man page
|
| scale_colour_manual |
Man page
|
| scale_fill_hue |
Man page
|
| scale_fill_manual |
Man page
|
| show |
Man page
|
| show,bcbioRNASeq-method |
Man page
|
| tmm |
Man page
Man page
|
| tmm,DESeqDataSet-method |
Man page
|
| tmm,bcbioRNASeq-method |
Man page
|
| tmm,matrix-method |
Man page
|
| topTables |
Man page
Man page
|
| topTables,DESeqResults-method |
Man page
|
| topTables,list-method |
Man page
|
| tpm |
Man page
Man page
|
| tpm,bcbioRNASeq-method |
Man page
|
| txi |
Man page
|
| updateObject |
Man page
|
| updateObject,bcbioRNASeq-method |
Man page
|
