plotDispEsts: Plot Dispersion Estimates
In WeiSong-bio/roryk-bcbioRNASeq: RNA-Seq Utilities

Description Usage Arguments Value Author(s) See Also Examples

Method support for plotting the dispersion of counts stored in a bcbioRNASeq object. Here we're generating a DESeqDataSet object on the fly, which already has method support for plotting dispersion, provided by the DESeq2 package.

1 2	## S4 method for signature 'bcbioRNASeq' plotDispEsts(object, ...)

`object`	Object.
`...`	Passthrough arguments to `DESeq2::plotDispEsts()`.

ggplot.

Michael Steinbaugh

DESeq2::plotDispEsts().
getMethod("plotDispEsts", "DESeqDataSet").

Other Quality Control Functions: plot5Prime3PrimeBias, plotCorrelationHeatmap, plotCountDensity, plotCountsPerGene, plotExonicMappingRate, plotGenderMarkers, plotGeneSaturation, plotGenesDetected, plotIntronicMappingRate, plotMappedReads, plotMappingRate, plotMeanSD, plotPCACovariates, plotPCA, plotRRNAMappingRate, plotTotalReads

# bcbioRNASeq ====
plotDispEsts(bcb_small)

# Custom colors, using DESeq2 parameters
plotDispEsts(
    bcb_small,
    genecol = "gray",
    fitcol = "purple",
    finalcol = "orange"
)