topTables: Top Tables of Differential Expression Results

Description Usage Arguments Value Author(s) See Also Examples

Description

Top Tables of Differential Expression Results

Usage

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topTables(object, ...)

## S4 method for signature 'DESeqResults'
topTables(object, n = 50L, coding = FALSE)

## S4 method for signature 'list'
topTables(object, n = 50L, coding = FALSE)

Arguments

object

resultsTables() return list.

...

Additional arguments.

n

Number genes to report.

coding

Whether to only return coding genes.

Value

kable.

Author(s)

Michael Steinbaugh

See Also

Other R Markdown Functions: prepareRNASeqTemplate

Examples

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# DESeqResults ====
# Minimal return
topTables(res_small, n = 5L)

# resultsTables list ====
# Return with gene annotations and DESeq2 normalized counts
x <- resultsTables(
    results = res_small,
    counts = dds_small
)
topTables(x, n = 5L)

WeiSong-bio/roryk-bcbioRNASeq documentation built on July 6, 2019, 12:02 a.m.